labblouin.MATT2GM module

Process MATT output and convert them to the GM format.

MATT2GM Copyright (C) 2012 Christian Blouin MATT2GM Version Copyright (C) 2013 Christian Blouin - Jose Sergio Hleap - Alex Safatli

This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

You should have received a copy of the GNU General Public License along with this program. If not, see <http://www.gnu.org/licenses/>.

E-mail: cblouin@cs.dal.ca, jshleap@squalus.org, iltafas@gmail.com

Requirements: 1) Python:

#PDBnet.py is a python script and have# #to be provided with this code # #######################################

labblouin.MATT2GM.GetMask(A)

labblouin.MATT2GM.LoadFasta(filename)

labblouin.MATT2GM.RemoveNonHomologous(pdb, aln, msk, mapfile)

labblouin.MATT2GM.Rename_fasta(prefix)

Rename the chains in the fasta file

labblouin.MATT2GM.main(prefix, alphaC=False, redundant=False)